Detailed information of SNP:
|
SNP ID:
sf0707468073(Gbrowse)
Chromosome: chr07 Position: 7468073 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 54.53% | 45.47% |
| All Indica | 795 | 91.07% | 8.93% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 208 | 78.37% | 21.63% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707468073 | G->C | INTERGENIC | None |