Detailed information of SNP:
|
SNP ID:
sf0707489736(Gbrowse)
Chromosome: chr07 Position: 7489736 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 57.36% | 42.64% |
| All Indica | 796 | 91.46% | 8.54% |
| All Japonica | 497 | 7.65% | 92.35% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 209 | 77.99% | 22.01% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707489736 | T->C | INTERGENIC | None |