Detailed information of SNP:
|
SNP ID:
sf0707493588(Gbrowse)
Chromosome: chr07 Position: 7493588 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 52.53% | 47.47% |
| All Indica | 786 | 87.28% | 12.72% |
| All Japonica | 496 | 2.22% | 97.78% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 368 | 91.03% | 8.97% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 206 | 76.21% | 23.79% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707493588 | G->A | LOC_Os07g13070(LOC_Os07g13070.1) | INTRON |