Detailed information of SNP:
|
SNP ID:
sf0707513303(Gbrowse)
Chromosome: chr07 Position: 7513303 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 95.82% | 4.18% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 491 | 89.00% | 11.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 63 | 55.56% | 44.44% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707513303 | C->T | LOC_Os07g13120(LOC_Os07g13120.1) | Non-Synonymous SNP |