Detailed information of SNP:
|
SNP ID:
sf0707514290(Gbrowse)
Chromosome: chr07 Position: 7514290 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 51.45% | 48.55% |
| All Indica | 798 | 87.97% | 12.03% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 86.79% | 13.21% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707514290 | C->T | INTERGENIC | None |