Detailed information of SNP:
|
SNP ID:
sf0707565886(Gbrowse)
Chromosome: chr07 Position: 7565886 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1339 | 52.50% | 47.50% |
| All Indica | 730 | 18.36% | 81.64% |
| All Japonica | 493 | 95.33% | 4.67% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 337 | 13.95% | 86.05% |
| Indica II | 200 | 17.00% | 83.00% |
| Indica Intermediate | 193 | 27.46% | 72.54% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 62.16% | 37.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707565886 | T->C | LOC_Os07g13190(LOC_Os07g13190.1) | Synonymous |