Detailed information of SNP:
|
SNP ID:
sf0707566588(Gbrowse)
Chromosome: chr07 Position: 7566588 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 56.25% | 43.75% |
| All Indica | 798 | 90.10% | 9.90% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707566588 | G->A | LOC_Os07g13190(LOC_Os07g13190.1) | Synonymous |