Detailed information of SNP:
|
SNP ID:
sf0707582689(Gbrowse)
Chromosome: chr07 Position: 7582689 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1372 | 57.94% | 42.06% |
| All Indica | 790 | 94.18% | 5.82% |
| All Japonica | 470 | 3.83% | 96.17% |
| Aus | 58 | 17.24% | 82.76% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 203 | 82.76% | 17.24% |
| Temperate Japonica | 315 | 3.17% | 96.83% |
| Tropical Japonica | 89 | 5.62% | 94.38% |
| Japonica Intermediate | 66 | 4.55% | 95.45% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707582689 | C->T | LOC_Os07g13234(LOC_Os07g13234.1) | UTR_5_PRIME |
| sf0707582689 | C->T | LOC_Os07g13234(LOC_Os07g13234.2) | UTR_5_PRIME |