Detailed information of SNP:
|
SNP ID:
sf0707583122(Gbrowse)
Chromosome: chr07 Position: 7583122 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 94.42% | 5.58% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 496 | 86.90% | 13.10% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707583122 | A->G | INTERGENIC | None |