Detailed information of SNP:
|
SNP ID:
sf0707583473(Gbrowse)
Chromosome: chr07 Position: 7583473 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 51.37% | 48.63% |
| All Indica | 770 | 88.70% | 11.30% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 369 | 94.31% | 5.69% |
| Indica II | 199 | 90.95% | 9.05% |
| Indica Intermediate | 202 | 76.24% | 23.76% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 34 | 44.12% | 55.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707583473 | C->T | INTERGENIC | None |