Detailed information of SNP:
|
SNP ID:
sf0707589211(Gbrowse)
Chromosome: chr07 Position: 7589211 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1238 | 98.22% | 1.78% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 326 | 94.48% | 5.52% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 184 | 92.93% | 7.07% |
| Tropical Japonica | 82 | 98.78% | 1.22% |
| Japonica Intermediate | 60 | 93.33% | 6.67% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707589211 | G->A | INTERGENIC | None |