Detailed information of SNP:
|
SNP ID:
sf0707649975(Gbrowse)
Chromosome: chr07 Position: 7649975 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 52.22% | 47.78% |
| All Indica | 798 | 89.60% | 10.40% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 74.29% | 25.71% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707649975 | G->A | LOC_Os07g13340(LOC_Os07g13340.1) | Non-Synonymous SNP |