Detailed information of SNP:
|
SNP ID:
sf0707653726(Gbrowse)
Chromosome: chr07 Position: 7653726 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 52.30% | 47.70% |
| All Indica | 797 | 90.09% | 9.91% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 209 | 75.60% | 24.40% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707653726 | C->G | LOC_Os07g13340(LOC_Os07g13340.1) | Non-Synonymous SNP |