Detailed information of SNP:
|
SNP ID:
sf0707665305(Gbrowse)
Chromosome: chr07 Position: 7665305 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 56.70% | 43.30% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707665305 | A->C | INTERGENIC | None |