Detailed information of SNP:
|
SNP ID:
sf0707705011(Gbrowse)
Chromosome: chr07 Position: 7705011 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 51.91% | 48.09% |
| All Indica | 799 | 89.24% | 10.76% |
| All Japonica | 495 | 1.21% | 98.79% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 29.27% | 70.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707705011 | C->T | LOC_Os07g13430(LOC_Os07g13430.1) | INTRON |