Detailed information of SNP:
|
SNP ID:
sf0707710776(Gbrowse)
Chromosome: chr07 Position: 7710776 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 51.06% | 48.94% |
| All Indica | 794 | 88.04% | 11.96% |
| All Japonica | 495 | 1.01% | 98.99% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 372 | 95.97% | 4.03% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 210 | 73.33% | 26.67% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707710776 | T->C | INTERGENIC | None |