Detailed information of SNP:
|
SNP ID:
sf0707729078(Gbrowse)
Chromosome: chr07 Position: 7729078 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 88.15% | 11.85% |
| All Indica | 792 | 92.55% | 7.45% |
| All Japonica | 494 | 80.77% | 19.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 204 | 83.82% | 16.18% |
| Temperate Japonica | 334 | 82.63% | 17.37% |
| Tropical Japonica | 92 | 61.96% | 38.04% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707729078 | A->G | LOC_Os07g13490(LOC_Os07g13490.1) | INTRON |