Detailed information of SNP:
|
SNP ID:
sf0707771637(Gbrowse)
Chromosome: chr07 Position: 7771637 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 58.57% | 41.43% |
| All Indica | 793 | 97.86% | 2.14% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707771637 | G->A | INTERGENIC | None |