Detailed information of SNP:
|
SNP ID:
sf0707779689(Gbrowse)
Chromosome: chr07 Position: 7779689 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1324 | 53.85% | 46.15% |
| All Indica | 716 | 96.65% | 3.35% |
| All Japonica | 496 | 0.81% | 99.19% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 365 | 97.81% | 2.19% |
| Indica II | 192 | 94.79% | 5.21% |
| Indica Intermediate | 159 | 96.23% | 3.77% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 31 | 41.94% | 58.06% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707779689 | C->T | INTERGENIC | None |