Detailed information of SNP:
|
SNP ID:
sf0707793528(Gbrowse)
Chromosome: chr07 Position: 7793528 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 62.03% | 37.97% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 496 | 15.73% | 84.27% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 20.00% | 80.00% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707793528 | A->G | LOC_Os07g13590(LOC_Os07g13590.1) | UTR_3_PRIME |