Detailed information of SNP:
|
SNP ID:
sf0707875381(Gbrowse)
Chromosome: chr07 Position: 7875381 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 59.52% | 40.48% |
| All Indica | 797 | 91.97% | 8.03% |
| All Japonica | 488 | 13.32% | 86.68% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 327 | 15.90% | 84.10% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707875381 | T->A | INTERGENIC | None |