Detailed information of SNP:
|
SNP ID:
sf0707876150(Gbrowse)
Chromosome: chr07 Position: 7876150 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 59.40% | 40.60% |
| All Indica | 785 | 92.87% | 7.13% |
| All Japonica | 485 | 12.37% | 87.63% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 370 | 93.78% | 6.22% |
| Indica II | 209 | 92.34% | 7.66% |
| Indica Intermediate | 206 | 91.75% | 8.25% |
| Temperate Japonica | 323 | 14.24% | 85.76% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 39.47% | 60.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707876150 | G->A | LOC_Os07g13728(LOC_Os07g13728.1) | Non-Synonymous SNP |