Detailed information of SNP:
|
SNP ID:
sf0707878610(Gbrowse)
Chromosome: chr07 Position: 7878610 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 91.68% | 8.32% |
| All Indica | 788 | 85.79% | 14.21% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 367 | 86.65% | 13.35% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 208 | 74.52% | 25.48% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707878610 | C->T | LOC_Os07g13728(LOC_Os07g13728.1) | Non-Synonymous SNP |