Detailed information of SNP:
|
SNP ID:
sf0707880457(Gbrowse)
Chromosome: chr07 Position: 7880457 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 56.39% | 43.61% |
| All Indica | 798 | 94.74% | 5.26% |
| All Japonica | 496 | 1.81% | 98.19% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707880457 | T->C | INTERGENIC | None |