Detailed information of SNP:
|
SNP ID:
sf0707883520(Gbrowse)
Chromosome: chr07 Position: 7883520 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1367 | 61.38% | 38.62% |
| All Indica | 793 | 96.72% | 3.28% |
| All Japonica | 453 | 7.51% | 92.49% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 208 | 97.12% | 2.88% |
| Temperate Japonica | 295 | 8.14% | 91.86% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 64 | 7.81% | 92.19% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707883520 | T->C | LOC_Os07g13740(LOC_Os07g13740.1) | Non-Synonymous SNP |