Detailed information of SNP:
|
SNP ID:
sf0707890673(Gbrowse)
Chromosome: chr07 Position: 7890673 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 97.28% | 2.72% |
| All Indica | 779 | 96.15% | 3.85% |
| All Japonica | 494 | 99.19% | 0.81% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 362 | 96.41% | 3.59% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 207 | 94.69% | 5.31% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707890673 | C->T | LOC_Os07g13750(LOC_Os07g13750.1) | Synonymous |