Detailed information of SNP:
|
SNP ID:
sf0707894421(Gbrowse)
Chromosome: chr07 Position: 7894421 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 63.82% | 36.18% |
| All Indica | 773 | 37.65% | 62.35% |
| All Japonica | 494 | 98.79% | 1.21% |
| Aus | 59 | 89.83% | 10.17% |
| Indica I | 367 | 34.06% | 65.94% |
| Indica II | 208 | 33.17% | 66.83% |
| Indica Intermediate | 198 | 48.99% | 51.01% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707894421 | A->G | LOC_Os07g13760(LOC_Os07g13760.1) | Synonymous |