Detailed information of SNP:
|
SNP ID:
sf0707895188(Gbrowse)
Chromosome: chr07 Position: 7895188 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1323 | 83.67% | 16.33% |
| All Indica | 712 | 70.22% | 29.78% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 340 | 62.65% | 37.35% |
| Indica II | 184 | 73.91% | 26.09% |
| Indica Intermediate | 188 | 80.32% | 19.68% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707895188 | G->T | LOC_Os07g13760(LOC_Os07g13760.1) | Synonymous |