Detailed information of SNP:
|
SNP ID:
sf0708020495(Gbrowse)
Chromosome: chr07 Position: 8020495 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 58.32% | 41.68% |
| All Indica | 798 | 95.86% | 4.14% |
| All Japonica | 493 | 3.25% | 96.75% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708020495 | T->C | LOC_Os07g14060(LOC_Os07g14060.1) | INTRON |