Detailed information of SNP:



SNP ID: sf0708020495(Gbrowse)

Chromosome: chr07

Position: 8020495
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1413 58.32% 41.68%
All Indica798 95.86% 4.14%
All Japonica493 3.25% 96.75%
Aus66 28.79% 71.21%
Indica I375 96.80% 3.20%
Indica II213 96.24% 3.76%
Indica Intermediate210 93.81% 6.19%
Temperate Japonica334 2.40% 97.60%
Tropical Japonica93 6.45% 93.55%
Japonica Intermediate66 3.03% 96.97%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 57.14% 42.86%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0708020495 T->C LOC_Os07g14060(LOC_Os07g14060.1) INTRON