Detailed information of SNP:
|
SNP ID:
sf0708062662(Gbrowse)
Chromosome: chr07 Position: 8062662 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 94.76% | 5.24% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 455 | 85.93% | 14.07% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 312 | 90.38% | 9.62% |
| Tropical Japonica | 84 | 80.95% | 19.05% |
| Japonica Intermediate | 59 | 69.49% | 30.51% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708062662 | G->T | INTERGENIC | None |