Detailed information of SNP:
|
SNP ID:
sf0708098154(Gbrowse)
Chromosome: chr07 Position: 8098154 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 60.14% | 39.86% |
| All Indica | 792 | 97.35% | 2.65% |
| All Japonica | 492 | 5.49% | 94.51% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 205 | 94.63% | 5.37% |
| Temperate Japonica | 330 | 6.06% | 93.94% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708098154 | A->G | LOC_Os07g14210(LOC_Os07g14210.1) | Non-Synonymous SNP |