Detailed information of SNP:
|
SNP ID:
sf0708108470(Gbrowse)
Chromosome: chr07 Position: 8108470 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1320 | 65.68% | 34.32% |
| All Indica | 726 | 92.98% | 7.02% |
| All Japonica | 477 | 22.64% | 77.36% |
| Aus | 64 | 76.56% | 23.44% |
| Indica I | 320 | 89.06% | 10.94% |
| Indica II | 210 | 97.62% | 2.38% |
| Indica Intermediate | 196 | 94.39% | 5.61% |
| Temperate Japonica | 321 | 9.03% | 90.97% |
| Tropical Japonica | 89 | 53.93% | 46.07% |
| Japonica Intermediate | 67 | 46.27% | 53.73% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708108470 | A->G | INTERGENIC | None |