Detailed information of SNP:
|
SNP ID:
sf0708116809(Gbrowse)
Chromosome: chr07 Position: 8116809 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 60.82% | 39.18% |
| All Indica | 770 | 34.55% | 65.45% |
| All Japonica | 494 | 98.79% | 1.21% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 362 | 39.78% | 60.22% |
| Indica II | 206 | 23.79% | 76.21% |
| Indica Intermediate | 202 | 36.14% | 63.86% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708116809 | G->T | LOC_Os07g14250(LOC_Os07g14250.1) | Non-Synonymous SNP |