Detailed information of SNP:
|
SNP ID:
sf0708151910(Gbrowse)
Chromosome: chr07 Position: 8151910 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 93.63% | 6.37% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 486 | 91.15% | 8.85% |
| Aus | 60 | 53.33% | 46.67% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 87 | 63.22% | 36.78% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 10 | 0.00% | 100.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708151910 | C->T | INTERGENIC | None |