Detailed information of SNP:
|
SNP ID:
sf0708154833(Gbrowse)
Chromosome: chr07 Position: 8154833 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 91.93% | 8.07% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 493 | 86.61% | 13.39% |
| Aus | 65 | 47.69% | 52.31% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 97.90% | 2.10% |
| Tropical Japonica | 92 | 48.91% | 51.09% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708154833 | G->A | INTERGENIC | None |