Detailed information of SNP:
|
SNP ID:
sf0708220206(Gbrowse)
Chromosome: chr07 Position: 8220206 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 57.27% | 42.73% |
| All Indica | 797 | 95.11% | 4.89% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708220206 | C->T | INTERGENIC | None |