Detailed information of SNP:
|
SNP ID:
sf0708221934(Gbrowse)
Chromosome: chr07 Position: 8221934 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 59.01% | 40.99% |
| All Indica | 797 | 97.24% | 2.76% |
| All Japonica | 491 | 2.04% | 97.96% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 329 | 1.22% | 98.78% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708221934 | T->G | INTERGENIC | None |