Detailed information of SNP:
|
SNP ID:
sf0708224854(Gbrowse)
Chromosome: chr07 Position: 8224854 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 59.63% | 40.37% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708224854 | A->G | LOC_Os07g14410(LOC_Os07g14410.1) | Synonymous |