Detailed information of SNP:
|
SNP ID:
sf0708266239(Gbrowse)
Chromosome: chr07 Position: 8266239 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 58.44% | 41.56% |
| All Indica | 791 | 88.37% | 11.63% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 369 | 89.16% | 10.84% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 209 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 18.81% | 81.19% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708266239 | T->C | LOC_Os07g14514(LOC_Os07g14514.3) | INTRON |
| sf0708266239 | T->C | LOC_Os07g14514(LOC_Os07g14514.2) | INTRON |
| sf0708266239 | T->C | LOC_Os07g14514(LOC_Os07g14514.1) | INTRON |
| sf0708266239 | T->C | LOC_Os07g14514(LOC_Os07g14514.6) | INTRON |
| sf0708266239 | T->C | LOC_Os07g14514(LOC_Os07g14514.5) | INTRON |
| sf0708266239 | T->C | LOC_Os07g14514(LOC_Os07g14514.4) | INTRON |