Detailed information of SNP:
|
SNP ID:
sf0708273946(Gbrowse)
Chromosome: chr07 Position: 8273946 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 98.57% | 1.43% |
| All Indica | 780 | 97.56% | 2.44% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 206 | 96.12% | 3.88% |
| Indica Intermediate | 200 | 95.50% | 4.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708273946 | C->T | LOC_Os07g14514(LOC_Os07g14514.2) | INTRON |
| sf0708273946 | C->T | LOC_Os07g14514(LOC_Os07g14514.6) | INTRON |
| sf0708273946 | C->T | LOC_Os07g14514(LOC_Os07g14514.4) | INTRON |