Detailed information of SNP:
|
SNP ID:
sf0708284424(Gbrowse)
Chromosome: chr07 Position: 8284424 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 51.59% | 48.41% |
| All Indica | 799 | 88.49% | 11.51% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708284424 | C->A | LOC_Os07g14530(LOC_Os07g14530.2) | Non-Synonymous SNP |
| sf0708284424 | C->A | LOC_Os07g14530(LOC_Os07g14530.3) | Non-Synonymous SNP |
| sf0708284424 | C->A | LOC_Os07g14530(LOC_Os07g14530.1) | Non-Synonymous SNP |