Detailed information of SNP:
|
SNP ID:
sf0708362936(Gbrowse)
Chromosome: chr07 Position: 8362936 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 57.77% | 42.23% |
| All Indica | 744 | 91.40% | 8.60% |
| All Japonica | 491 | 12.83% | 87.17% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 353 | 96.88% | 3.12% |
| Indica II | 201 | 90.55% | 9.45% |
| Indica Intermediate | 190 | 82.11% | 17.89% |
| Temperate Japonica | 329 | 17.02% | 82.98% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708362936 | T->C | LOC_Os07g14680(LOC_Os07g14680.1) | INTRON |