Detailed information of SNP:
|
SNP ID:
sf0708372674(Gbrowse)
Chromosome: chr07 Position: 8372674 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 59.12% | 40.88% |
| All Indica | 791 | 97.85% | 2.15% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 204 | 96.57% | 3.43% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708372674 | C->T | INTERGENIC | None |