Detailed information of SNP:
|
SNP ID:
sf0708378058(Gbrowse)
Chromosome: chr07 Position: 8378058 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1334 | 60.04% | 39.96% |
| All Indica | 726 | 29.20% | 70.80% |
| All Japonica | 490 | 99.59% | 0.41% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 343 | 17.20% | 82.80% |
| Indica II | 185 | 41.62% | 58.38% |
| Indica Intermediate | 198 | 38.38% | 61.62% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708378058 | C->T | INTERGENIC | None |