Detailed information of SNP:
|
SNP ID:
sf0708429091(Gbrowse)
Chromosome: chr07 Position: 8429091 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 60.61% | 39.39% |
| All Indica | 799 | 93.37% | 6.63% |
| All Japonica | 497 | 14.29% | 85.71% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 18.81% | 81.19% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708429091 | A->G | LOC_Os07g14760(LOC_Os07g14760.1) | Synonymous |