Detailed information of SNP:
|
SNP ID:
sf0708449745(Gbrowse)
Chromosome: chr07 Position: 8449745 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 51.59% | 48.41% |
| All Indica | 795 | 87.92% | 12.08% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 210 | 88.57% | 11.43% |
| Indica Intermediate | 210 | 74.76% | 25.24% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708449745 | G->A | LOC_Os07g14800(LOC_Os07g14800.1) | INTRON |