Detailed information of SNP:
|
SNP ID:
sf0708552758(Gbrowse)
Chromosome: chr07 Position: 8552758 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 56.95% | 43.05% |
| All Indica | 798 | 96.24% | 3.76% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708552758 | A->G | INTERGENIC | None |