Detailed information of SNP:
|
SNP ID:
sf0708594953(Gbrowse)
Chromosome: chr07 Position: 8594953 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 56.42% | 43.58% |
| All Indica | 798 | 95.86% | 4.14% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708594953 | C->T | LOC_Os07g14990(LOC_Os07g14990.1) | INTRON |