Detailed information of SNP:
SNP ID:
sf0708596735(Gbrowse)
Chromosome: chr07 Position: 8596735 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1408 | 55.26% | 44.74% |
All Indica | 790 | 94.68% | 5.32% |
All Japonica | 496 | 0.60% | 99.40% |
Aus | 67 | 2.99% | 97.01% |
Indica I | 369 | 97.02% | 2.98% |
Indica II | 210 | 95.71% | 4.29% |
Indica Intermediate | 211 | 89.57% | 10.43% |
Temperate Japonica | 335 | 0.60% | 99.40% |
Tropical Japonica | 94 | 1.06% | 98.94% |
Japonica Intermediate | 67 | 0.00% | 100.00% |
Group VI/Aromatic | 14 | 0.00% | 100.00% |
Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0708596735 | C->T | LOC_Os07g14990(LOC_Os07g14990.1) | Non-Synonymous SNP |