Detailed information of SNP:
|
SNP ID:
sf0708596979(Gbrowse)
Chromosome: chr07 Position: 8596979 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 60.71% | 39.29% |
| All Indica | 793 | 93.82% | 6.18% |
| All Japonica | 497 | 14.08% | 85.92% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 371 | 95.15% | 4.85% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 18.21% | 81.79% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0708596979 | T->C | LOC_Os07g14990(LOC_Os07g14990.1) | Non-Synonymous SNP |